Recent Publications:
B.J.F. Keijser, E. Zaura, S.M. Huse,J.M.B.M. van der Vossen, F.H.J. Schuren,R.C. Montijn, J.M. ten Cate, and W. Crielaard. 2008.
Pyrosequencing analysis of the oral microflora of healthy adults.
Journal of Dental Research 87(11):1016-1020, 2008
Fernan Aguero, Bissan Al-Lazikani, Martin Aslett, Matthew Berriman,
Frederick S. Buckner, Robert K. Campbell, Santiago Carmona, Ian M. Carruthers,
A. W. Edith Chan, Feng Chen, Gregory J. Crowther, Maria A. Doyle,
Christiane Hertz-Fowler, Andrew L. Hopkins, Gregg McAllister, Solomon Nwaka,
John P. Overington, Arnab Pain, Gaia V. Paolini, Ursula Pieper, Stuart A. Ralph,
Aaron Riechers, David S. Roos, Andrej Sali, Dhanasekaran Shanmugam,
Takashi Suzuki, Wesley C. Van Voorhis and Christophe L. M. J. Verlinde.
Genomic-scale prioritization of drug
targets: the TDR Targets database.
Nature Reviews Drug Discovery Volume 7, November 2008, 900-907.
San Gil, I., Sheldon,W., Schmidt, T., Servilla, M., Aguilar, R., Gries, C.,
Gray, T., Field, D., Cole, J., Yun Pan, J., Palanisamy, G., Henshaw, D.,
O'Brien, M., Kinkel, L., McMahon, K., Kottmann, R., Amaral-Zettler, L.,
Hobbie, J., Goldstein, P., Guralnick, R. P., Brunt, J., and Michener W. K.,
Defining linkages between the GSC and NSF's LTER program: How the Ecological
Metadata Language (EML) relates to GCDML and other outcomes. 2008. OMICS A
Journal of Integrative Biology,12(2):151-156.
Huber, J.A. and J.F. Holden.
2008.
Modeling the impact of diffuse vent microorganisms along mid-ocean ridges and flanks.
In Lowell, R.P., J. S. Seewald, A. Metaxas, and M.R. Perfit (eds.), 215-231.
Magma to Microbe: Modeling Hydrothermal Processes at Oceanic Spreading Ridges.
American Geophysical Union Press, Washington, D.C.
Tamas, I., J. J. Wernegreen, B. Nystedt, S. N. Kauppinen, A. C. Darby,
L. Gomez-Valero, D. Lundin, A. M. Poole and S. G. Andersson
(2008).
"Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts."
Proc Natl Acad Sci U S A 105(39): 14934-9.
Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao,
Alan Gingle, Greg Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen Kraemer, Wei
Li, John A. Miller, Hilary G. Morrison, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian
J. Stoeckert, Jr, Steven Sullivan, Charles Treatman and Haiming Wang.
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
Nucleic Acids Res. First published online 29 Sep 2008; doi:10.1093/nar/gkn631
Fredrickson, J.K., Romine, M.F., Beliaev, A.S., Auchtung, J.M., Driscoll, M.E., Gardner, T.S., Nealson, K.H., Osterman, A.L., Pinchuk, G., Reed, J.L., Rodionov, D.A., Rodrigues, J.L., Saffarini, D.A., Serres, M.H., Spormann, A.M., Zhulin, I.B., Tiedje, J.M. (2008).
Towards environmental systems biology of Shewanella.
Nature Reviews Microbiology,
2008 Aug;6(8):592-603..
Lasek-Nesselquist, E., A. Bogomolni, R. Gast,
D. Mark Welch, J.C. Ellis,
M.L. Sogin, and M. Moore. 2008. Molecular characterization of Giardia intestinalis in marine animals: variation and zoonotic potential. Diseases of Aquatic Organisms 81: 39-51.
E.A. Gladyshev,
M. Meselson, and
I.R. Arkhipova
(2008)
Massive horizontal gene transfer in bdelloid rotifers.
Science 320: 1210-1213.
Cara M. Santelli,
Beth N. Orcutt,
Erin Banning,
Wolfgang Bach,
Craig L. Moyer,
Mitchell L. Sogin,
Hubert Staudigel &
Katrina J. Edwards
Abundance and diversity of microbial life in ocean crust
Nature 453, 653-656 (29 May 2008)
N. Schostak,
K. Pyatkov,
E. Zelentsova,
I. Arkhipova,
D. Shagin,
E. Mudrik,
A. Blintsov,
I. Clark,
D.J. Finnegan,
M. Evgen'ev
(2008)
Molecular dissection of Penelope transposable element regulatory machinery.
Nucleic Acids Res. 36(8): 2522-2529
Suga, K.,
D. B. Mark Welch,
Y. Tanaka, Y. Sakakura,
and A. Hagiwara, 2008.
Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis.
Molecular Biology and Evolution
2008 25: 1129-1137.
Manda Clair Jost, David M. Hillis, Ying Lu, John W. Kyle, Harry A.
Fozzard, and
Harold H. Zakon, 2008.
Toxin-Resistant Sodium Channels: Parallel Adaptive Evolution across a Complete Gene Family
Molecular Biology and Evolution 2008 25: 1016-1024; doi:10.1093/molbev/msn025.
Riley M.,
Staley J.T., Danchin A., Wang T., Brettin T.S., Hauser L.J., Land M.L., Thompson L.S.
Genomics of an extreme psychrophile, Psychromonas ingrahamii.
BMC Genomics. 2008 May 6;9(1):210
PMID: 18460197.
Alliegro, M.,
Alliegro, M. A., 2008.
Centrosomal RNA correlates with intron-poor nuclear genes in Spisula oocytes.
Proceedings of the National Academy of Sciences
105:6993-6997.
Amaral Zettler, L. A.,
Peplies, J., Ramette,
A. Fuchs, B.,
Ludwig, W., and
Glšckner, F. O.,
Proceedings of the International Workshop on Ribosomal RNA
Technology, April 7-9, 2008, Bremen, Germany, 2008. Syst. Appl. Microbiol.
31(4): 258-268.
Rull, K., Hallast, P., Uuskula, L., Jackson, J., Punab, M., Salumets, A.,
Campbell, R.K., and Laan, M.
Fine scale quantification of hCG beta gene transcription in human trophoblastic and non-malignant non-trophoblastic tissues.
Mol. Human Reprod. 14:23-31. (2008) E-published November 29, 2007.
McKenna, S.D., Feger, G., Kelton, C., Yang, M., Ardissone, V., Cirillo, R., Vitte, P.A., Jiang, X., and Campbell, R.K.
Tumor necrosis factor (TNF)-soluble high-affinity receptor complex as a TNF antagonist.
J. Pharmacol Exp. Ther. 322:822-828. (2007)
Dethlefsen L, Huse S, Sogin ML, Relman DA (2008)
The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing. PLoS Biol 6(11): e280 doi:10.1371/journal.pbio.0060280
Gladyshev, E.,
Meselson, M., 2008.
Extreme resistance of bdelloid rotifers to ionizing radiation
Proceedings of the National Academy of Sciences
10.1073/pnas.0800966105
Huse, S. M.,
J. A. Huber,
Morrison, H. G.,
Sogin, M.L.,
Mark Welch, D.
(2007).
Accuracy and quality of massively-parallel DNA pyrosequencing.
Genome Biology 8: R143.
Driscoll, M.E., Romine, M.F., Juhn, F.S., Serres, M.H., McCue, L.A., Beliaev, A.S., Fredrickson, J.K., Gardner, T.S. (2007).
Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.
Genome Informatics, 2007;18:287-98..
